ISCB-Asia/SCCG 2012, session on Workflows and the Cloud for Reproducible Computing


Eamonn Maguire
University of Oxford, United Kingdom

The open source ISA metadata tracking framework: from data curation and management at the source, to the linked data universe

Abstract

Minimum reporting guidelines, terminologies and formats (referred to generally as community standards) are increasingly used in the structuring and curation of datasets, enabling data annotation to varying degrees and reproducible research. But how can we enable researchers to make use of existing community standards and maximize curation and sharing and their subsequent reuse of richly annotated experimental information? A successful example is provided by the Investigation/Study/Assay (ISA) open source, metadata tracking framework supported by the growing ISA Commons community

Biography

Eamonn Maguire is the lead developer of the ISA infrastructure (http://isa-tools.org, http://isacommons.org) at the University of Oxford’s e-Science Research Center. Eamonn's background is in Computer Science (bachelors) and Bioinformatics (masters) and he is undertaking a D.Phil (PhD) in Computer Science at the University of Oxford focusing on biological data and metadata visualization. Eamonn previously worked at the European Bioinformatics Institute from 2008 until July 2010.