| GIW XXXI/ISCB-Asia V at National Cheng Kung University, Tainan, Taiwan |
| Map to Venue |
| Conference Program (click on titles to see talk abstracts) |
| Day 1 Monday, December 12, 2022 [day2] [day3] |
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| 9:30 – 17:00 |
Registration Desk Open
|
| 9:45 – 10:00 |
Opening Ceremony |
| 10:00 – 11:00 |
Keynote: Martin Steinegger
Mega-scale protein structure prediction and search |
| Day 1, Morning Session Keynote intro & session chair: Paul Horton |
| 11:00 – 11:30 |
How to optimally sample a sequence for rapid analysis
Martin Frith, Jim Shaw and John Spouge
|
| 11:30 – 12:00 |
SlowMoMan: A web app for discovery of important features along user-drawn trajectories in 2D embeddings
Kiran Deol, Griffin Weber and Yun William Yu
|
| 12:00 – 13:30 |
Lunch off-site (locals can help international participants find food in small groups) |
| 13:30 – 14:30 |
Keynote: Naomichi Matsumoto
Technological advances in NGS and bioinformatics for the analysis of human genetic diseases |
| Day 1, Afternoon Session Keynote intro & session chair: Masayuki Hashimoto |
| 14:30 – 15:00 |
HIGHLIGHT: Clinical and therapeutic application of adenosine to inosine RNA editing in glioma
Sean Chun-Chang Chen and Sheng-Hau Lin
|
| 15:00 – 15:30 |
☕ Coffee Break ☕ |
| 15:30 – 17:30 |
Poster Session |
| Day 2 Tuesday, December 13, 2022 [day1] [day3] |
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| 09:00 – 10:00 |
Keynote: Pao-Yang Chen
Epigenome Bioinformatics in Plants |
Day 2, Morning Session Keynote intro & session chair: Tsunglin Liu |
| 10:00 – 10:20 |
Inference of single-cell network using mutual information for scRNA-seq data analysis
Lan-Yun Chang, Ting-Yi Hao, Wei-Jie Wang and Chun-Yu Lin
|
| 10:20 – 10:40 |
Extracting T cell receptor reads from RNA-Seq data for studying non-recombined sequences in T cell lymphoma cell lines
Chen-Yan Hung, Cheng-Han Lin and Tsunglin Liu
|
| 10:40 – 11:00 |
An immune-suppressing protein in human endogenous retroviruses
Huan Zhang, Shengliang Ni and Martin Frith
|
| 11:00 – 11:20 |
Anomalous Relative Frequency of Trimeric Tandem Repeats in Animal Genomes
Chotinan Nitikitpaiboon and Martin Frith
|
| 11:20 – 11:40 |
Incorporating tissue-specific gene expression data to improve chemical-disease inference
Shan-Shan Wang, Chia-Chi Wang, Chien-Lun Wang and Chun-Wei Tung
|
| 11:40 – 12:00 |
Advanced unsupervised feature extraction finds novel application and software tool to select more reasonable differentially methylated cytosines
Y-H. Taguchi and Turki Turki
|
| 12:00 – 13:00 |
Lunch on-site (lunch boxes provided) |
Day 2, Afternoon Session Session chair: Torbjörn Martin Nordling |
| 13:00 – 13:20 |
A putative scenario of how de novo protein-coding genes originate in the Saccharomyces cerevisiae lineage
Tetsushi Yada and Takeaki Taniguch
|
| 13:20 – 13:40 |
DNA-protein quasi-mapping for rapid differential gene expression analysis in non-model organisms
Kyle Santiago and Anish Man Singh Shrestha
|
| 13:40 – 14:00 |
Representation of Neuron Activity and Examination of Cell Detection in Calcium Imaging Data by Max-Min Intensity Images
Yu-Wei Tsay, Chia-Ying Wu, Wei-Hsin Chen, Chien-Chang Chen and Arthur Chun-Chieh Shih
|
| 14:00 – 14:20 |
NuKit: A Deep Learning Platform for Fast Nucleus Segmentation of Histopathological Images
Ching-Nung Lin, Christine H Chung and Aik Choon Tan
|
| 14:20 – 14:40 |
Highly-accurate prediction of colorectal cancer through low abundance uncultivated genomes recovered using metagenomic co-assembly and binning approach
Po-Ting Lin and Yu-Wei Wu
|
| 14:40 – 15:00 |
stoppage time or stretch legs |
| 15:00 – 15:30 |
☕ Coffee Break ☕ |
| 15:30 – 17:30 |
Excursion to Chimei Museum |
| 18:00 – 20:00 |
Conference Banquet @ Shangri-La Far Eastern |
| Day 3 Wednesday, December 14, 2022 [day1] [day2] |
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| 09:00 – 10:00 |
Keynote: Zhiping Weng
Annotating human and mouse candidate cis-regulatory elements in the ENCODE project |
| Day 3, Morning Session Keynote intro & session chair Pao-Yang Chen |
| 10:00 – 10:40 |
SCREEN and Factorbook: tools for exploring non-coding regulatory elements in the human genome
Henry Pratt
|
| 10:40 – 11:00 |
A comparative analysis of ENCODE and Cistrome in the context of TF binding signal
Stefano Perna, Pietro Pinoli, Stefano Ceri and Limsoon Wong
|
| 11:00 – 11:20 |
MethylSeqLogo: DNA methylation smart sequence logos
Fei-Man Hsu and Paul Horton
|
| 11:20 – 11:40 |
Predicting splicing patterns from the transcription factor binding sites in the promoter with deep learning
Tzu-Chieh Lin, Cheng-Hung Tsai, Cheng-Kai Shiau, Jia-Hsin Huang and Huai-Kuang Tsai
|
| 11:40 – 13:00 |
Lunch off-site (locals can help international participants find food in small groups) |
| 13:00 – 15:00 |
|
| 15:00 – 15:30 |
☕ Coffee Break ☕ |
| Day 3, Afternoon Session Session chair Wesson Wu |
| 15:30 – 15:50 |
ThermalProGAN: a sequence-based thermally stable protein generator trained using un-paired data
Hui-Ling Huang, Chong-Heng Weng, Torbjörn E. M. Nordling and Yi-Fan Liou
|
| 15:50 – 16:10 |
Evaluating network-based missing protein prediction using p-values, Bayes Factors, and probabilities
Wilson Wen Bin Goh, Kong Weijia and Limsoon Wong
|
| 16:10 – 16:30 |
A Deconvolution Approach to Unveiling the Immune Microenvironment of Complex Tissues and Tumors in Transcriptomics
Shu-Hwa Chen, Bo-Yi Yu, Wen-Yu Kuo, Ya-Bo Lin, Sheng-Yao Sue, I-Hsuan Lu, Chung-Yen Lin and Wei-Hsuan Chuang
|
| 16:30 – 16:50 |
Effective modeling of the chromatin structure by coarse-grained methods
Irina Tuszynska, Paweł Bednarz and Bartek Wilczynski
|
| 16:50 – 17:05 |
Awards & Closing Remarks |